miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|190155855|gb|FG651080.1|FG651080 TTTTTTTTTTTTTTGCTTCTGCTTTGTGGATAAAATCCGCTGCTTGGTCCAGGGTCTCTTGCAAGTCTGTGAGCTTGGTG
TTGTGCTCTGCAAGCTGGGTCAGTATGTCAGGAATCAGTGATCTGCTTTCATTATGTCTCTTCTGCCACTGTTCAACTTG
TTTTAGCAAATCCTGAGCTGCTTCAGATTCTTCGCCTGCAAGTTGCATTTGAATGGTGAATGGTTTGCGGGCTCTGATGT
CCATCATCATCTCTTCTGCTACCTTGAGCTTCTGGATGATATCTTCAGGCCTCAGATCATGCTCAACCCCATAGTATTCC
ACCTTGCTGCCGATTTCCTGGACATTATCTATCATATTTTGAAGTGCCTGCACAAGAATAGTAGCACGATTGGTCATCTC
CATGGTTTTCTTCTGAACCAGTAGGCCTTTCCTTGATTCTTGATTTGTCTTTTCATCTAGTGCATTGATATCTTTGAGAA
GATCAGTCATTTCGTTGGCAGCATGATCAATCTGGCTCTTCATCAGTGCAGAAGTATTATCCTTTTCGGATAGTTTTTCC
TTGAGGATGAAAGTGGTGGAATTGAGGTCATGCAAGTGTTTGTGAGCAGCAACCCCAGTGGAGATGCTGAGGAGAGTTTC
TTTGCTTTCATCGATGGACTGAGCTGCCAAGGCCAATATCATCTGTCAAGTCCCAATGCATTTGTCACAGCTAT




Most similar to sp|Q16363|LAMA4_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q16363|LAMA4_HUMAN Laminin subunit alpha-4 OS=Homo sapiens
           GN=LAMA4 PE=1 SV=4
          Length = 1823

 Score =  233 bits (595), Expect = 7e-61
 Identities = 115/232 (49%), Positives = 167/232 (71%)
 Frame = -3

Query: 712 SCDKCIGT*QMILALAAQSIDESKETLLSISTGVAAHKHLHDLNSTTFILKEKLSEKDNT 533
           SCDKC+      L LAA SI+E K  +LS+S+G AAH+H++++N+T ++LK KLSE++N 
Sbjct: 272 SCDKCVWDLTDALRLAALSIEEGKSGVLSVSSGAAAHRHVNEINATIYLLKTKLSERENQ 331

Query: 532 SALMKSQIDHAANEMTDLLKDINALDEKTNQESRKGLLVQKKTMEMTNRATILVQALQNM 353
            AL K QI++A N M  LL D+  L EK NQ SRKG LVQK++M+  N A+ LV+   +M
Sbjct: 332 YALRKIQINNAENTMKSLLSDVEELVEKENQASRKGQLVQKESMDTINHASQLVEQAHDM 391

Query: 352 IDNVQEIGSKVEYYGVEHDLRPEDIIQKLKVAEEMMMDIRARKPFTIQMQLAGEESEAAQ 173
            D +QEI +K+ YYG EH+L P++I +KL +A++M+ +IR+R+PF  Q +L  EE++ A 
Sbjct: 392 RDKIQEINNKMLYYGEEHELSPKEISEKLVLAQKMLEEIRSRQPFFTQRELVDEEADEAY 451

Query: 172 DLLKQVEQWQKRHNESRSLIPDILTQLAEHNTKLTDLQETLDQAADFIHKAE 17
           +LL Q E WQ+ HNE+R+L P +L QL ++N KL+DLQE LDQA +++  AE
Sbjct: 452 ELLSQAESWQRLHNETRTLFPVVLEQLDDYNAKLSDLQEALDQALNYVRDAE 503